HL_8PNN_047

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8PNN|1|1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_047 not in the Motif Atlas

Homologous match to HL_8P9A_161

Geometric discrepancy: 0.0789

The information below is about HL_8P9A_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8PNN|1|1|U|2292
8PNN|1|1|C|2293
8PNN|1|1|U|2294
8PNN|1|1|A|2295
8PNN|1|1|A|2296
8PNN|1|1|U|2297
8PNN|1|1|U|2298
8PNN|1|1|A|2299
8PNN|1|1|G|2300

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain A

Small subunit ribosomal RNA; SSU rRNA