HL_8PNN_195

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

8PNN|1|sR|G|487, 8PNN|1|sR|C|489, 8PNN|1|sR|A|492, 8PNN|1|sR|U|493, 8PNN|1|sR|U|494, 8PNN|1|sR|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_195 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.0609

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PNN|1|sR|G|486
8PNN|1|sR|G|487
8PNN|1|sR|G|488
8PNN|1|sR|C|489
8PNN|1|sR|C|490
8PNN|1|sR|C|491
8PNN|1|sR|A|492
8PNN|1|sR|U|493
8PNN|1|sR|U|494
8PNN|1|sR|C|495
8PNN|1|sR|G|496
8PNN|1|sR|G|497
8PNN|1|sR|G|498
8PNN|1|sR|U|499
8PNN|1|sR|C|500
8PNN|1|sR|U|501

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A