HL_8PNN_217

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

8PNN|1|sR|C|1700, 8PNN|1|sR|A|1701, 8PNN|1|sR|A|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_217 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.0697

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PNN|1|sR|A|1691
8PNN|1|sR|G|1692
8PNN|1|sR|A|1693
8PNN|1|sR|A|1694
8PNN|1|sR|G|1695
8PNN|1|sR|G|1696
8PNN|1|sR|G|1697
8PNN|1|sR|G|1698
8PNN|1|sR|G|1699
8PNN|1|sR|C|1700
8PNN|1|sR|A|1701
8PNN|1|sR|A|1702
8PNN|1|sR|C|1703
8PNN|1|sR|U|1704
8PNN|1|sR|C|1705
8PNN|1|sR|C|1706
8PNN|1|sR|A|1707
8PNN|1|sR|U|1708
8PNN|1|sR|C|1709
8PNN|1|sR|U|1710

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A