HL_8PPK_013

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

8PPK|1|2|U|573

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_013 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.2227

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|A|569
8PPK|1|2|C|570
8PPK|1|2|U|571
8PPK|1|2|PSU|572
8PPK|1|2|U|573
8PPK|1|2|A|574
8PPK|1|2|A|575
8PPK|1|2|A2M|576
8PPK|1|2|U|577
8PPK|1|2|C|578
8PPK|1|2|C|579
8PPK|1|2|U|580
8PPK|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24