HL_8PPK_038

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8PPK|1|2|U|1300, 8PPK|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_038 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1648

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8PPK|1|2|A|1295
8PPK|1|2|U|1296
8PPK|1|2|U|1297
8PPK|1|2|G|1298
8PPK|1|2|A|1299
8PPK|1|2|U|1300
8PPK|1|2|A|1301
8PPK|1|2|G|1302
8PPK|1|2|C|1303
8PPK|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a