HL_8PPL_005

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8PPL|1|A2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2085

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PPL|1|A2|G|288
8PPL|1|A2|G|289
8PPL|1|A2|U|290
8PPL|1|A2|G|291
8PPL|1|A2|A|292
8PPL|1|A2|C|293
8PPL|1|A2|U|294
8PPL|1|A2|C|295

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AL

40S ribosomal protein S11