HL_8PPL_025

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8PPL|1|A2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_025 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1362

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8PPL|1|A2|A|1295
8PPL|1|A2|U|1296
8PPL|1|A2|U|1297
8PPL|1|A2|G|1298
8PPL|1|A2|A|1299
8PPL|1|A2|U|1300
8PPL|1|A2|A|1301
8PPL|1|A2|G|1302
8PPL|1|A2|C|1303
8PPL|1|A2|U|1304

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a