HL_8PPL_039
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AGGUGAAAU(PSU)
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PPL_039 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.2181
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8PPL|1|A2|A|957
8PPL|1|A2|G|958
8PPL|1|A2|G|959
8PPL|1|A2|U|960
8PPL|1|A2|G|961
8PPL|1|A2|A|962
8PPL|1|A2|A|963
8PPL|1|A2|A|964
8PPL|1|A2|U|965
8PPL|1|A2|PSU|966
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AO
- 40S ribosomal protein S14
- Chain Ir
- Eukaryotic translation initiation factor 2 subunit 1
- Chain Is
- Eukaryotic translation initiation factor 2 subunit 2
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