HL_8PV4_007
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAGAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8PV4|1|C1|G|212, 8PV4|1|C1|A|213, 8PV4|1|C1|G|214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1183
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8PV4|1|C1|G|210
8PV4|1|C1|U|211
8PV4|1|C1|G|212
8PV4|1|C1|A|213
8PV4|1|C1|G|214
8PV4|1|C1|A|215
8PV4|1|C1|G|216
8PV4|1|C1|C|217
8PV4|1|C1|C|218
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
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