HL_8PV4_014

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

8PV4|1|C1|U|590, 8PV4|1|C1|U|592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_014 not in the Motif Atlas

Geometric match to HL_6MSF_001

Geometric discrepancy: 0.1077

The information below is about HL_6MSF_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8PV4|1|C1|C|589
8PV4|1|C1|U|590
8PV4|1|C1|C|591
8PV4|1|C1|U|592
8PV4|1|C1|G|593

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein l7-like protein