HL_8PV4_027
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_027 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.2595
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8PV4|1|C1|G|1131
8PV4|1|C1|G|1132
8PV4|1|C1|A|1133
8PV4|1|C1|U|1134
8PV4|1|C1|G|1135
8PV4|1|C1|A|1136
8PV4|1|C1|A|1137
8PV4|1|C1|C|1138
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CL
- Putative GTP binding protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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