HL_8PV4_039

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_039 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.0835

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PV4|1|C1|G|1699
8PV4|1|C1|U|1700
8PV4|1|C1|U|1701
8PV4|1|C1|U|1702
8PV4|1|C1|G|1703
8PV4|1|C1|U|1704
8PV4|1|C1|C|1705

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Ce

Ribosome biogenesis protein NOP53

Chain LR

Ribosomal protein L19

Chain Lp

60S ribosomal protein L43-like protein