HL_8PV4_043

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8PV4|1|C1|C|1846

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_043 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1262

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV4|1|C1|U|1842
8PV4|1|C1|G|1843
8PV4|1|C1|A|1844
8PV4|1|C1|A|1845
8PV4|1|C1|C|1846
8PV4|1|C1|A2M|1847
8PV4|1|C1|G|1848

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19