HL_8PV4_044

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|U|1905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_044 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0577

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8PV4|1|C1|C|1903
8PV4|1|C1|U|1904
8PV4|1|C1|U|1905
8PV4|1|C1|C|1906
8PV4|1|C1|G|1907
8PV4|1|C1|G|1908

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cf

Ribosome production factor 2 homolog

Chain Lp

60S ribosomal protein L43-like protein