HL_8PV4_053

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|U|2435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_053 not in the Motif Atlas

Geometric match to HL_7RQB_007

Geometric discrepancy: 0.3385

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8PV4|1|C1|C|2433
8PV4|1|C1|U|2434
8PV4|1|C1|U|2435
8PV4|1|C1|C|2436
8PV4|1|C1|G|2437
8PV4|1|C1|G|2438

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lr

Ribosomal protein