HL_8PV4_058

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

8PV4|1|C1|A|2656, 8PV4|1|C1|G|2657, 8PV4|1|C1|G|2658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_058 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1416

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PV4|1|C1|C|2652
8PV4|1|C1|A|2653
8PV4|1|C1|A|2654
8PV4|1|C1|A|2655
8PV4|1|C1|A|2656
8PV4|1|C1|G|2657
8PV4|1|C1|G|2658
8PV4|1|C1|G|2659

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cf

Ribosome production factor 2 homolog

Chain LD

60S ribosomal protein l5-like protein