HL_8PV4_064

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU(OMG)UUCA

Length

7 nucleotides

Bulged bases

8PV4|1|C1|U|2882, 8PV4|1|C1|U|2883

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_064 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2545

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8PV4|1|C1|U|2879
8PV4|1|C1|U|2880
8PV4|1|C1|OMG|2881
8PV4|1|C1|U|2882
8PV4|1|C1|U|2883
8PV4|1|C1|C|2884
8PV4|1|C1|A|2885

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cd

Nucleolar GTP-binding protein 2