HL_8PV4_070

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCGAAGUG

Length

9 nucleotides

Bulged bases

8PV4|1|C1|A|3186, 8PV4|1|C1|A|3187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_070 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.304

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8PV4|1|C1|C|3182
8PV4|1|C1|U|3183
8PV4|1|C1|C|3184
8PV4|1|C1|G|3185
8PV4|1|C1|A|3186
8PV4|1|C1|A|3187
8PV4|1|C1|G|3188
8PV4|1|C1|U|3189
8PV4|1|C1|G|3190

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein