HL_8PV5_022
3D structure
- PDB id
- 8PV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 8PV5|1|C1|A|895
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV5_022 not in the Motif Atlas
- Homologous match to HL_8C3A_021
- Geometric discrepancy: 0.099
- The information below is about HL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8PV5|1|C1|G|892
8PV5|1|C1|C|893
8PV5|1|C1|G|894
8PV5|1|C1|A|895
8PV5|1|C1|A|896
8PV5|1|C1|A|897
8PV5|1|C1|G|898
8PV5|1|C1|A|899
8PV5|1|C1|C|900
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
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