HL_8PV6_015
3D structure
- PDB id
- 8PV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- C(OMG)UCUUGAAAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV6_015 not in the Motif Atlas
- Geometric match to HL_8C3A_205
- Geometric discrepancy: 0.3742
- The information below is about HL_8C3A_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.2
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8PV6|1|C1|C|626
8PV6|1|C1|OMG|627
8PV6|1|C1|U|628
8PV6|1|C1|C|629
8PV6|1|C1|U|630
8PV6|1|C1|U|631
8PV6|1|C1|G|632
8PV6|1|C1|A|633
8PV6|1|C1|A|634
8PV6|1|C1|A|635
8PV6|1|C1|C|636
8PV6|1|C1|A2M|637
8PV6|1|C1|C|638
8PV6|1|C1|G|639
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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