HL_8PVK_026
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GGUAAGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVK_026 not in the Motif Atlas
- Geometric match to HL_4V9F_039
- Geometric discrepancy: 0.1829
- The information below is about HL_4V9F_039
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_67772.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8PVK|1|C1|G|1109
8PVK|1|C1|G|1110
8PVK|1|C1|U|1111
8PVK|1|C1|A|1112
8PVK|1|C1|A|1113
8PVK|1|C1|G|1114
8PVK|1|C1|C|1115
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cg
- Ribosome biogenesis regulatory protein
- Chain LT
- 60S ribosomal protein l21-like protein
Coloring options: