HL_8Q4F_046

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8Q4F|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_046 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1412

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8Q4F|1|a|A|382
8Q4F|1|a|C|383
8Q4F|1|a|A|384
8Q4F|1|a|C|385
8Q4F|1|a|G|386
8Q4F|1|a|U|387
8Q4F|1|a|G|388
8Q4F|1|a|G|389
8Q4F|1|a|U|390
8Q4F|1|a|A|391
8Q4F|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28