HL_8Q5I_021

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8Q5I|1|1|A|909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0921

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|G|906
8Q5I|1|1|C|907
8Q5I|1|1|G|908
8Q5I|1|1|A|909
8Q5I|1|1|A|910
8Q5I|1|1|A|911
8Q5I|1|1|G|912
8Q5I|1|1|A|913
8Q5I|1|1|C|914

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain j

60S ribosomal protein L2-B

Chain v

60S ribosomal protein L15-A