HL_8Q5I_047

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8Q5I|1|1|U|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_047 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0586

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Q5I|1|1|U|2270
8Q5I|1|1|C|2271
8Q5I|1|1|U|2272
8Q5I|1|1|A|2273
8Q5I|1|1|A|2274
8Q5I|1|1|U|2275
8Q5I|1|1|U|2276
8Q5I|1|1|A|2277
8Q5I|1|1|G|2278

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain A

Small subunit ribosomal RNA; SSU rRNA