HL_8Q5I_079

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8Q5I|1|A|U|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_079 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.053

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Q5I|1|A|G|241
8Q5I|1|A|A|242
8Q5I|1|A|U|243
8Q5I|1|A|G|244
8Q5I|1|A|A|245
8Q5I|1|A|U|246
8Q5I|1|A|U|247
8Q5I|1|A|C|248

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

40S ribosomal protein S6

Chain M

40S ribosomal protein S11A