HL_8QBT_096
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8QBT|1|i|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QBT_096 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0652
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8QBT|1|i|G|786
8QBT|1|i|A|787
8QBT|1|i|U|788
8QBT|1|i|U|789
8QBT|1|i|A|790
8QBT|1|i|G|791
8QBT|1|i|A|792
8QBT|1|i|U|793
8QBT|1|i|A|794
8QBT|1|i|C|795
8QBT|1|i|C|796
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein bS21
- Chain 4
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 30S ribosomal protein S11
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