HL_8QCQ_004

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2138

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8QCQ|1|A|C|136
8QCQ|1|A|G|137
8QCQ|1|A|U|138
8QCQ|1|A|A|139
8QCQ|1|A|A|140
8QCQ|1|A|U|141
8QCQ|1|A|G|142
8QCQ|1|A|G|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23