HL_8QCQ_007

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

8QCQ|1|A|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.13

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8QCQ|1|A|C|228
8QCQ|1|A|A|229
8QCQ|1|A|A|230
8QCQ|1|A|A|231
8QCQ|1|A|U|232
8QCQ|1|A|G|233

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15