HL_8QCQ_027

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

8QCQ|1|A|U|1004, 8QCQ|1|A|G|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0996

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8QCQ|1|A|U|1001
8QCQ|1|A|G|1002
8QCQ|1|A|A|1003
8QCQ|1|A|U|1004
8QCQ|1|A|A|1005
8QCQ|1|A|A|1006
8QCQ|1|A|G|1007
8QCQ|1|A|A|1008

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16