HL_8QCQ_032

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8QCQ|1|A|C|1364, 8QCQ|1|A|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_032 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0532

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

8QCQ|1|A|G|1363
8QCQ|1|A|C|1364
8QCQ|1|A|U|1365
8QCQ|1|A|C|1366
8QCQ|1|A|G|1367
8QCQ|1|A|U|1368
8QCQ|1|A|C|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22