HL_8QCQ_054

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8QCQ|1|A|A|2297, 8QCQ|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0624

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8QCQ|1|A|C|2293
8QCQ|1|A|U|2294
8QCQ|1|A|A|2295
8QCQ|1|A|A|2296
8QCQ|1|A|A|2297
8QCQ|1|A|A|2298
8QCQ|1|A|G|2299
8QCQ|1|A|G|2300
8QCQ|1|A|U|2301
8QCQ|1|A|A|2302
8QCQ|1|A|A|2303
8QCQ|1|A|C|2304
8QCQ|1|A|G|2305

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27