HL_8QCQ_063

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_063 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.0663

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8QCQ|1|A|C|2623
8QCQ|1|A|G|2624
8QCQ|1|A|U|2625
8QCQ|1|A|G|2626
8QCQ|1|A|A|2627
8QCQ|1|A|G|2628

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain w

Transfer RNA; tRNA