HL_8QCQ_066

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8QCQ|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.069

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8QCQ|1|A|C|2774
8QCQ|1|A|U|2775
8QCQ|1|A|G|2776
8QCQ|1|A|A|2777
8QCQ|1|A|A|2778
8QCQ|1|A|A|2779
8QCQ|1|A|G|2780
8QCQ|1|A|C|2781
8QCQ|1|A|A|2782
8QCQ|1|A|U|2783
8QCQ|1|A|C|2784
8QCQ|1|A|U|2785
8QCQ|1|A|A|2786
8QCQ|1|A|A|2787
8QCQ|1|A|G|2788

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6

Chain J

50S ribosomal protein L13