HL_8QCQ_079

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

8QCQ|1|a|C|338, 8QCQ|1|a|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.2496

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8QCQ|1|a|G|328
8QCQ|1|a|A|329
8QCQ|1|a|C|330
8QCQ|1|a|U|331
8QCQ|1|a|G|332
8QCQ|1|a|A|333
8QCQ|1|a|G|334
8QCQ|1|a|A|335
8QCQ|1|a|C|336
8QCQ|1|a|A|337
8QCQ|1|a|C|338
8QCQ|1|a|G|339
8QCQ|1|a|G|340
8QCQ|1|a|C|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20