HL_8QCQ_096

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8QCQ|1|a|G|1104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_096 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.079

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8QCQ|1|a|G|1099
8QCQ|1|a|U|1100
8QCQ|1|a|U|1101
8QCQ|1|a|A|1102
8QCQ|1|a|A|1103
8QCQ|1|a|G|1104
8QCQ|1|a|U|1105
8QCQ|1|a|C|1106

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7