HL_8QCQ_105
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUUUGGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QCQ_105 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1383
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8QCQ|1|w|G|32
8QCQ|1|w|U|33
8QCQ|1|w|U|34
8QCQ|1|w|U|35
8QCQ|1|w|G|36
8QCQ|1|w|G|37
8QCQ|1|w|G|38
8QCQ|1|w|A|39
8QCQ|1|w|C|40
Current chains
- Chain w
- Pro-tRNA
Nearby chains
- Chain 8
- mRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
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