HL_8QCQ_107
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAGCUUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8QCQ|1|y|G|19, 8QCQ|1|y|G|20, 8QCQ|1|y|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QCQ_107 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1164
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QCQ|1|y|C|13
8QCQ|1|y|A|14
8QCQ|1|y|G|15
8QCQ|1|y|C|16
8QCQ|1|y|U|17
8QCQ|1|y|U|18
8QCQ|1|y|G|19
8QCQ|1|y|G|20
8QCQ|1|y|U|21
8QCQ|1|y|A|22
8QCQ|1|y|G|23
Current chains
- Chain y
- Pro-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- Transfer RNA; tRNA
Coloring options: