HL_8QCQ_114

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_114 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1401

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8QCQ|1|A|G|2333
8QCQ|1|A|U|2334
8QCQ|1|A|U|2335
8QCQ|1|A|G|2336
8QCQ|1|A|G|2337
8QCQ|1|A|A|2338
8QCQ|1|A|A|2339
8QCQ|1|A|A|2340
8QCQ|1|A|U|2341

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5