HL_8QFD_023
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 8QFD|1|5|A|1622
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_023 not in the Motif Atlas
- Homologous match to HL_8C3A_021
- Geometric discrepancy: 0.1066
- The information below is about HL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8QFD|1|5|G|1619
8QFD|1|5|C|1620
8QFD|1|5|G|1621
8QFD|1|5|A|1622
8QFD|1|5|A|1623
8QFD|1|5|A|1624
8QFD|1|5|G|1625
8QFD|1|5|A|1626
8QFD|1|5|C|1627
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L15
- Chain j
- Ribosomal protein L37
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