HL_8QFD_042
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8QFD|1|5|C|2786, 8QFD|1|5|G|2788, 8QFD|1|5|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_042 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0872
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8QFD|1|5|C|2784
8QFD|1|5|G|2785
8QFD|1|5|C|2786
8QFD|1|5|A|2787
8QFD|1|5|G|2788
8QFD|1|5|C|2789
8QFD|1|5|A|2790
8QFD|1|5|G|2791
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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