HL_8QOI_045
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8QOI|1|L5|C|2794, 8QOI|1|L5|G|2796, 8QOI|1|L5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_045 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0881
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8QOI|1|L5|C|2792
8QOI|1|L5|G|2793
8QOI|1|L5|C|2794
8QOI|1|L5|A|2795
8QOI|1|L5|G|2796
8QOI|1|L5|C|2797
8QOI|1|L5|A|2798
8QOI|1|L5|G|2799
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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