HL_8QOI_053

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUAAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8QOI|1|L5|A|3760, 8QOI|1|L5|C|3761, 8QOI|1|L5|A|3763

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.3355

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8QOI|1|L5|G|3757
8QOI|1|L5|U|3758
8QOI|1|L5|A|3759
8QOI|1|L5|A|3760
8QOI|1|L5|C|3761
8QOI|1|L5|PSU|3762
8QOI|1|L5|A|3763
8QOI|1|L5|PSU|3764
8QOI|1|L5|G|3765
8QOI|1|L5|A|3766
8QOI|1|L5|C|3767

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA