HL_8QOI_054

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8QOI|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0696

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8QOI|1|L5|U|3796
8QOI|1|L5|C|3797
8QOI|1|L5|U|3798
8QOI|1|L5|A|3799
8QOI|1|L5|A|3800
8QOI|1|L5|U|3801
8QOI|1|L5|U|3802
8QOI|1|L5|A|3803
8QOI|1|L5|G|3804

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA