HL_8QPP_041

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8QPP|1|X|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_041 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.1179

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8QPP|1|X|G|197
8QPP|1|X|A|198
8QPP|1|X|A|199
8QPP|1|X|A|200
8QPP|1|X|C|201
8QPP|1|X|A|202
8QPP|1|X|U|203
8QPP|1|X|C|204

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L15

Chain v

Large ribosomal subunit protein bL28