HL_8QPP_096

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_096 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2803

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8QPP|1|X|A|2500
8QPP|1|X|G|2501
8QPP|1|X|U|2502
8QPP|1|X|C|2503
8QPP|1|X|C|2504
8QPP|1|X|A|2505
8QPP|1|X|C|2506
8QPP|1|X|A|2507
8QPP|1|X|U|2508

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6