HL_8QRK_014

3D structure

PDB id

8QRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

6.69 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8QRK|1|A|C|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRK_014 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2848

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8QRK|1|A|G|1217
8QRK|1|A|A|1218
8QRK|1|A|U|1219
8QRK|1|A|A|1220
8QRK|1|A|A|1221
8QRK|1|A|A|1222
8QRK|1|A|C|1223
8QRK|1|A|C|1224
8QRK|1|A|C|1225
8QRK|1|A|C|1226

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain G

28S ribosomal protein S9, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial