HL_8QRK_016
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- CCCACG
- Length
- 6 nucleotides
- Bulged bases
- 8QRK|1|A|A|1313
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QRK_016 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3071
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QRK|1|A|C|1310
8QRK|1|A|C|1311
8QRK|1|A|C|1312
8QRK|1|A|A|1313
8QRK|1|A|C|1314
8QRK|1|A|G|1315
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
Coloring options: