HL_8QRN_022
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GAGUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 8QRN|1|A|U|1448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QRN_022 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.3409
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QRN|1|A|G|1440
8QRN|1|A|A|1441
8QRN|1|A|G|1442
8QRN|1|A|U|1443
8QRN|1|A|A|1444
8QRN|1|A|G|1445
8QRN|1|A|A|1446
8QRN|1|A|G|1447
8QRN|1|A|U|1448
8QRN|1|A|G|1449
8QRN|1|A|C|1450
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
- Chain Z
- 28S ribosomal protein S33, mitochondrial
Coloring options: