HL_8QU1_009
3D structure
- PDB id
- 8QU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GGAACAGC
- Length
- 8 nucleotides
- Bulged bases
- 8QU1|1|A|A|2110, 8QU1|1|A|G|2113
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU1_009 not in the Motif Atlas
- Homologous match to HL_7RQB_027
- Geometric discrepancy: 0.2655
- The information below is about HL_7RQB_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
8QU1|1|A|G|2107
8QU1|1|A|G|2108
8QU1|1|A|A|2109
8QU1|1|A|A|2110
8QU1|1|A|C|2111
8QU1|1|A|A|2112
8QU1|1|A|G|2113
8QU1|1|A|C|2114
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
Coloring options: