HL_8QU5_012
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CCUAAAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 8QU5|1|A|A|2181
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU5_012 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.2706
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QU5|1|A|C|2175
8QU5|1|A|C|2176
8QU5|1|A|U|2177
8QU5|1|A|A|2178
8QU5|1|A|A|2179
8QU5|1|A|A|2180
8QU5|1|A|A|2181
8QU5|1|A|G|2182
8QU5|1|A|C|2183
8QU5|1|A|A|2184
8QU5|1|A|G|2185
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
- Chain t
- Unknown protein or protein extension
Coloring options: